The ImageJ wiki is a community-edited knowledge base on topics relating to ImageJ, a public domain program for processing and analyzing scientific images, and its ecosystem of derivatives and variants, including ImageJ2, Fiji, and others.
ImageJ Wiki Welcome to the ImageJ wiki ImageJ is open source software for processing and analyzing scientific images. This wiki is a community knowledge base for ImageJ and friends ImageJ ImageJ2 Fiji And many other flavors, their extensions, and related software projects. Get Started Users Developers Download Learn Extend Automate Develop Cite Discuss Contribute Community Why ImageJ? Powerful ImageJ facilitates image analysis techniques including image processing, colocalization, deconvolution, registration, segmentation, tracking, visualization, and more. Extensible ImageJ offers robust extensibility, harnessing the power of hundreds of plugins to assist with your imaging needs. Free & Open Source ImageJ is an open source project hosted on GitHub, developed by and for the scientific imaging community. Forum X/Twitter GitHub Design: HTML5 UP Accessibility ImageJ Docs Download Learn ImageJ Basics Tutorials User Guides Keyboard Shortcuts Tips and Tricks Troubleshooting Frequently Asked Questions Supported Platforms Windows MacOS Linux Raspberry Pi Android File Formats Bio-Formats Video formats QuickTime TIFF PDF DICOM Zeiss LSM Olympus VSI Opera Flex FIB-SEM Scientific Imaging Principles of Scientific Imaging Annotating Images Colocalization Color Image Processing Deconvolution Image Intensity Processing Particle Analysis Registration Segmentation Stack-slice Manipulations T-functions Tracking Visualization Z-functions Extend List of Extensions Update Sites List of Update Sites Following an Update Site Creating an Update Site Terms of Service Automatic Upload Uploading to Core Sites Update Sites FAQ Statistics Scripting Scripting Basics Script Editor Parameters User Input Auto Import Templates Batch Processing Running Headlessly Scripting Comparisons Toolbox Languages BeanShell Scripting Groovy Scripting ImageJ Macro JavaScript Lisp (Clojure) MATLAB Python (Jython) Python (native) R (Renjin) Ruby (JRuby) Scala Scripting Development Philosophy Architecture Source code Project management Coding style Using Javadoc Debugging Wish list Tools GitHub Maven CI/CD Dotfiles IDEs Eclipse NetBeans IntelliJ IDEA Command Line Guides Writing plugins Contributing to a plugin Development lifecycle Building a POM Hands-on debugging Adding new ops Adding new formats Using native libraries Tips for developers Tips for C++ developers ImageJ 1.x plugins Versioning Logging Uber-JARs Git Git in Eclipse (EGit) Git mini howto Git workshop Git conflicts Git topic branches Git notes Git reflogs Git submodules How to pinpoint regressions How to publish a git repository How to extract a subproject Contribute Citing Contributors Organizations Governance Funding Contributing to Fiji Licensing Open Source Apache BSD EPL GPL LGPL MIT Public domain BIG Proprietary Editing the Wiki Advanced Editing Buttons Citations Source Code Debugging Headers Icons Images Keyboard Shortcuts Linking Math Expressions Menu Paths Navigation Notices People Pitfalls Quizzes Statbox Symbols Tables Tooltips Videos Whitespace Discuss Reporting Issues Mailing Lists Chat Explore News Events Presentations Conferences Hackathons More... Libraries ImageJ Ops ImageJ Common ImageJ Legacy ImgLib2 SciJava SCIFIO More... Software NIH Image ImageJ ImageJ2 Fiji More...